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The distribution and cycling of biogenic silica (BSi) and lithogenic silicon (LSi) in the ocean play crucial roles in the global silicon cycle and marine ecosystem dynamics. This is especially the case in the Southern Ocean where diatoms constitute the predominant phytoplankton and participate in a major way to the biological carbon pump. This study presents an assessment of BSi and LSi concentrations along the GEOTRACES South West Indian Ocean Section (SWINGS, late austral summer 2021), where several and contrasting regions were encountered: oligotrophic Mozambique basin, HNLC (High Nutrient Low Chlorophyll) areas and regions fertilized by the Subantarctic islands. Suspended particles were sampled from Niskin bottles and in situ pumps, along with scanning electron microscope (SEM) observations and specific pigments measurements to support BSi and LSi analyses. With samples coming from a contrasting study area prone to diverse continental influences, our BSi and LSi results showed a reproducibility of 13 ± 7%, in the same range as the established protocol. BSi concentrations show a north-south gradient with maxima encountered in the Antarctic Zone, and contrasted results between HNLC open ocean areas and naturally fertilized regions in the vicinity of the Subantarctic islands. Some open ocean stations have unusually high BSi (e.g. > 5 μmol L􀀀 1) likely resulting from fertilization by aerosols, upwelling or island mass effect when they are downstream of the islands. Coupling of BSi with SEM observations and pigments measurements respectively showed diatoms were the most representative of the carrying phase of BSi and suggested silicification changes, induced either by heavily silicified diatoms or by micronutrient limitation in HNLC regions. BSi is often dominated by the smallest size fraction (0.45–5 μm) which represent 47 ± 23% of the total BSi based on 29 measurements on size fractionated samples. LSi results highlighted atmospheric inputs at the surface and nepheloid layers in the water column, which makes LSi overall a good indicator of the origin of lithogenic materials. SEM observations supported these results, enabling characterization of the diversity of lithogenic materials in the vicinity of the Subantarctic islands, more specifically volcanic ash around Heard Island, and within the nepheloid layers. 

Abstract High‐latitude oceans experience strong seasonality where low light limits photosynthetic activity most of the year. This limitation is pronounced for algae within and underlying sea ice, and these algae are uniquely acclimated to low light levels. During spring melt, however, light intensity and daylength increase drastically, triggering blooms of ice algae that play important roles in carbon cycling and ecosystem productivity. How the algae acclimate to this dynamic and heterogeneous environment is poorly understood. Here, we measured¹⁴C‐carbon fixation rates, photophysiology, and ribulose 1,5‐bisphosphate carboxylase oxygenase (Rubisco) content of sea‐ice algae in coastal waters near the western Antarctic Peninsula during spring, ranging from a low‐light‐acclimated, bottom community to a light‐saturated bloom. Carbon fixation rates by sea‐ice algae were similar to other Antarctic sea‐ice measurements (2–49 mg C m⁻²d⁻¹), and there was little phytoplankton biomass in the underlying water at the time of sampling. Net‐to‐gross ratios of carbon fixation were generally high and showed no relationship with ice type. We found algal photophysiology and Rubisco concentrations varied in relation to the different types of ice, altering the balance between the photochemical and biochemical processes that constrain carbon fixation rates. For algae inhabiting the bottom layers of sea ice, rates of carbon fixation were largely constrained by light availability whereas in surface seawater, interior and rotten/brash ice, carbon fixation rates could be calculated with reasonable accuracy from measurements of Rubisco concentrations. This work provides additional insight and means to evaluate carbon fixation rates as sea ice continues to change in future. 

Phytoplankton photosynthetic physiology can be investigated through single-turnover variable chlorophyll fluorescence (ST-ChlF) approaches, which carry unique potential to autonomously collect data at high spatial and temporal resolution. Over the past decades, significant progress has been made in the development and application of ST-ChlF methods in aquatic ecosystems, and in the interpretation of the resulting observations. At the same time, however, an increasing number of sensor types, sampling protocols, and data processing algorithms have created confusion and uncertainty among potential users, with a growing divergence of practice among different research groups. In this review, we assist the existing and upcoming user community by providing an overview of current approaches and consensus recommendations for the use of ST-ChlF measurements to examine in-situ phytoplankton productivity and photo-physiology. We argue that a consistency of practice and adherence to basic operational and quality control standards is critical to ensuring data inter-comparability. Large datasets of inter-comparable and globally coherent ST-ChlF observations hold the potential to reveal large-scale patterns and trends in phytoplankton photo-physiology, photosynthetic rates and bottom-up controls on primary productivity. As such, they hold great potential to provide invaluable physiological observations on the scales relevant for the development and validation of ecosystem models and remote sensing algorithms.